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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
DNase-seq
4
pCHi-C
1
ChIP-seq
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
1
DNA binding
1
DNA methylation
Target of assay
histone
3
histone modification
3
narrow histone mark
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
19
October, 2019
5
June, 2019
1
February, 2020
1
July, 2019
Available data
31
bed narrowPeak
5
bam
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
4
bigWig
1
bed bedMethyl
1
bigBed bedMethyl
Organism
57
Homo sapiens
Biosample type
54
tissue
3
primary cell
Organ
775
pancreas
631
liver
596
connective tissue
454
adipose tissue
423
epithelium
315
kidney
285
heart
160
vasculature
159
bone element
156
blood vessel
120
artery
96
brain
73
limb
62
musculature of body
57
eye
50
blood
50
bodily fluid
25
embryo
19
nerve
19
spleen
18
ureter
16
skeleton
10
lung
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
32
hg19
4
GRCh38
Lab
57
AMP-T2D consortium
target.investigated_as!
RNA binding protein
histone
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
57 results
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ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
ChIP-seq
RRBS
tissue
retina
15
3
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
1
1
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