Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
snATAC-seq
2
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
67
DNA binding
4
DNA accessibility
2
3D chromatin structure
Target of assay
51
transcription factor
16
histone
16
histone modification
RNA binding protein
10
chromatin remodeller
9
broad histone mark
8
control
7
narrow histone mark
Date released
25
December, 2018
21
October, 2019
13
November, 2018
12
January, 2019
1
January, 2018
1
March, 2020
Available data
70
bam
60
bigWig
57
bed narrowPeak
57
bigBed narrowPeak
50
fastq
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
73
Homo sapiens
Biosample type
51
cell line
22
primary cell
Organ
926
pancreas
733
liver
674
connective tissue
516
epithelium
486
adipose tissue
382
heart
345
kidney
283
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
95
musculature of body
60
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
73
AMP
Genome assembly (visualization)
62
hg19
56
GRCh38
Lab
73
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent control
target.investigated_as!
RNA binding protein
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
73 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
cell line
GM12878
50
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
Download