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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
187
DNA binding
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
RNA binding protein
3
chromatin remodeller
Date released
63
August, 2017
41
December, 2017
38
May, 2021
24
February, 2018
21
August, 2021
Available data
140
bam
114
fastq
109
bigWig
104
bed narrowPeak
40
tagAlign
19
bed bed3+
12
bigBed narrowPeak
Organism
187
Homo sapiens
Biosample type
844
tissue
419
cell line
269
primary cell
187
in vitro differentiated cells
3
stem cell
Organ
63
connective tissue
22
embryo
20
epithelium
13
liver
3
pancreas
Project
187
AMP
Genome assembly (visualization)
114
GRCh38
113
hg19
Lab
155
AMP-T2D consortium
32
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
187 results
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ChIP-seq
in vitro differentiated cells
adipocyte
63
embryonic stem cell
35
neural progenitor cell
21
pancreatic endoderm
18
hepatocyte
13
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