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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
181
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
44
transcription factor
37
control
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
59
August, 2017
42
August, 2021
40
December, 2017
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
279
bam
248
bigWig
131
tsv
129
fastq
126
bed narrowPeak
40
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
377
Homo sapiens
Biosample type
2689
tissue
1034
primary cell
586
cell line
377
in vitro differentiated cells
10
stem cell
Organ
88
connective tissue
28
embryo
22
epithelium
13
liver
3
pancreas
1
adipose tissue
1
heart
Project
377
AMP
Genome assembly (visualization)
286
hg19
254
GRCh38
4
hg18
Lab
328
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
RNA binding protein
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
377 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
58
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
35
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
17
4
1
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