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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
409
ChIP-seq
207
DNase-seq
27
ATAC-seq
5
FAIRE-seq
Assay category
409
DNA binding
239
DNA accessibility
Target of assay
364
histone
364
histone modification
229
broad histone mark
135
narrow histone mark
77
transcription factor
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
Date released
206
June, 2019
92
May, 2019
62
October, 2019
61
April, 2019
60
November, 2017
46
December, 2017
34
August, 2017
33
October, 2018
17
November, 2018
14
September, 2018
6
January, 2019
6
October, 2017
5
September, 2017
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2741
bam
2574
bigWig
1481
tsv
1341
bed narrowPeak
875
fastq
648
bigBed narrowPeak
378
tagAlign
258
bed bed3+
258
bed broadPeak
221
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
642
Homo sapiens
Biosample type
535
tissue
cell line
98
primary cell
15
in vitro differentiated cells
Organ
124
brain
101
kidney
88
heart
84
limb
78
vasculature
75
blood vessel
73
pancreas
68
epithelium
60
liver
47
musculature of body
26
nerve
24
artery
22
connective tissue
18
ureter
13
spleen
13
vein
5
adipose tissue
5
eye
Project
648
AMP
Genome assembly (visualization)
637
GRCh38
573
hg19
Lab
648
AMP-T2D consortium
Audit category:
27
inconsistent control
21
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
RNA binding protein
biosample_type!
cell line
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
648 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
36
2
kidney
18
13
1
heart left ventricle
25
3
tibial nerve
24
2
heart
7
18
+ See 53 more…
primary cell
endothelial cell of umbilical vein
10
2
1
skeletal muscle myoblast
11
2
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
+ See 24 more…
in vitro differentiated cells
hepatocyte
12
adipocyte
1
2
See all biosamples
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