Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
409
ChIP-seq
198
DNase-seq
27
ATAC-seq
4
FAIRE-seq
Assay category
409
DNA binding
229
DNA accessibility
Target of assay
371
histone
371
histone modification
232
broad histone mark
139
narrow histone mark
70
transcription factor
RNA binding protein
4
chromatin remodeller
Date released
206
June, 2019
92
May, 2019
62
October, 2019
61
April, 2019
60
November, 2017
46
December, 2017
40
August, 2017
34
October, 2018
November, 2018
14
September, 2018
6
January, 2019
6
October, 2017
5
September, 2017
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2745
bam
2581
bigWig
1481
tsv
1354
bed narrowPeak
878
fastq
638
bigBed narrowPeak
378
tagAlign
259
bed bed3+
249
bed broadPeak
212
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
632
Homo sapiens
Biosample type
524
tissue
cell line
99
primary cell
15
in vitro differentiated cells
Organ
122
brain
101
kidney
88
heart
84
limb
78
vasculature
75
blood vessel
75
pancreas
68
epithelium
54
liver
47
musculature of body
26
nerve
24
artery
21
connective tissue
18
ureter
13
vein
9
spleen
5
eye
4
adipose tissue
Project
638
AMP
Genome assembly (visualization)
628
GRCh38
563
hg19
Lab
638
AMP-T2D consortium
Audit category:
27
inconsistent control
21
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
7
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
RNA binding protein
biosample_type!
cell line
month_released!
November, 2018
BIOSAMPLE
ASSAY
638 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
33
kidney
18
13
1
heart left ventricle
25
3
tibial nerve
24
2
heart
7
18
+ See 53 more…
primary cell
skeletal muscle myoblast
12
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
+ See 24 more…
in vitro differentiated cells
hepatocyte
12
adipocyte
1
2
See all biosamples
Download