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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
351
ChIP-seq
198
DNase-seq
27
ATAC-seq
4
FAIRE-seq
Assay category
351
DNA binding
229
DNA accessibility
Target of assay
306
histone
306
histone modification
191
broad histone mark
115
narrow histone mark
73
transcription factor
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
Date released
201
June, 2019
61
April, 2019
59
November, 2017
56
May, 2019
46
December, 2017
40
August, 2017
34
October, 2018
29
October, 2019
17
November, 2018
14
September, 2018
6
January, 2019
6
October, 2017
5
September, 2017
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2661
bam
2514
bigWig
1465
tsv
1258
bed narrowPeak
903
fastq
580
bigBed narrowPeak
378
tagAlign
257
bed bed3+
246
bed broadPeak
209
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
19
bedpe bed3+
18
hic
11
bed bed3
8
csv
7
bed bedgraph
3
cool
2
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
574
Homo sapiens
Biosample type
482
tissue
cell line
83
primary cell
15
in vitro differentiated cells
Organ
124
brain
101
kidney
88
heart
84
limb
78
pancreas
78
vasculature
blood vessel
68
epithelium
61
liver
47
musculature of body
26
nerve
24
artery
22
connective tissue
18
ureter
13
spleen
13
vein
5
adipose tissue
5
eye
Project
580
AMP
Genome assembly (visualization)
570
GRCh38
506
hg19
Lab
580
AMP-T2D consortium
Audit category:
27
inconsistent control
21
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
7
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
RNA binding protein
biosample_type!
cell line
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
580 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
37
2
kidney
18
13
1
heart left ventricle
25
3
tibial nerve
24
2
body of pancreas
21
4
+ See 48 more…
primary cell
skeletal muscle myoblast
12
2
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
pancreatic alpha cell
6
+ See 21 more…
in vitro differentiated cells
hepatocyte
12
adipocyte
1
2
See all biosamples
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