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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
369
ChIP-seq
200
DNase-seq
5
ATAC-seq
3
FAIRE-seq
Assay category
369
DNA binding
208
DNA accessibility
Target of assay
328
histone
328
histone modification
205
broad histone mark
123
narrow histone mark
67
transcription factor
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
Date released
202
June, 2019
91
May, 2019
62
October, 2019
61
April, 2019
60
November, 2017
46
December, 2017
23
August, 2017
14
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2153
bam
2045
bigWig
1185
bed narrowPeak
1098
tsv
577
bigBed narrowPeak
442
fastq
359
tagAlign
243
bed bed3+
238
bed broadPeak
215
bigBed broadPeak
154
txt
73
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
15
bedpe bed3+
15
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
2
ibed
1
tagAlign bed3+
1
tar
Organism
577
Homo sapiens
Biosample type
485
tissue
cell line
77
primary cell
15
in vitro differentiated cells
Organ
124
brain
101
kidney
88
heart
84
limb
pancreas
78
vasculature
75
blood vessel
68
epithelium
61
liver
47
musculature of body
26
nerve
24
artery
22
connective tissue
18
ureter
13
spleen
13
vein
5
adipose tissue
5
eye
Project
577
AMP
Genome assembly (visualization)
568
GRCh38
504
hg19
Lab
577
AMP-T2D consortium
Audit category:
27
inconsistent control
21
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
2
inconsistent assembly
2
inconsistent control read length
1
inconsistent control run_type
target.investigated_as!
RNA binding protein
biosample_type!
cell line
organ_slims!
pancreas
BIOSAMPLE
ASSAY
577 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
37
2
kidney
18
13
1
heart left ventricle
25
3
tibial nerve
24
2
heart
7
18
+ See 49 more…
primary cell
skeletal muscle myoblast
12
2
endothelial cell of umbilical vein
10
2
1
skeletal muscle satellite cell
7
mesenchymal stem cell
6
cardiac fibroblast
2
3
+ See 20 more…
in vitro differentiated cells
hepatocyte
12
adipocyte
1
2
See all biosamples
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