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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
40
single cell RNA-seq
16
total RNA-seq
3
ATAC-seq
Assay category
115
DNA binding
56
Transcription
3
DNA accessibility
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
23
control
RNA binding protein
5
transcription factor
Date released
619
February, 2021
403
August, 2017
373
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
214
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
88
November, 2017
76
April, 2019
73
September, 2018
65
October, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
39
February, 2018
35
May, 2024
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
115
bam
95
bigWig
92
bed narrowPeak
92
bigBed narrowPeak
41
fastq
19
zippedFastqFolder
Organism
174
Homo sapiens
Biosample type
111
tissue
63
primary cell
Organ
47
blood vessel
47
vasculature
28
brain
23
epithelium
21
pancreas
19
heart
7
limb
7
musculature of body
4
artery
4
kidney
Project
115
AMP
59
HPAP
Genome assembly (visualization)
94
GRCh38
92
hg19
Lab
115
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
target.investigated_as!
RNA binding protein
biosample_type!
cell line
BIOSAMPLE
ASSAY
174 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
tissue
ascending aorta
15
temporal lobe
15
thoracic aorta
15
angular gyrus
13
aorta
13
+ See 6 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
kidney epithelial cell
4
pancreatic beta cell
1
1
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