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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
total RNA-seq
80
ChIP-seq
8
ATAC-seq
8
DNase-seq
6
WGBS
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
472
Transcription
80
DNA binding
16
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
41
histone
41
histone modification
27
control
24
broad histone mark
18
transcription factor
17
narrow histone mark
RNA binding protein
Date released
447
February, 2021
57
August, 2017
18
July, 2019
18
October, 2018
17
June, 2019
6
November, 2020
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
528
bam
507
bigWig
473
tsv
41
fastq
24
bed narrowPeak
19
bigBed narrowPeak
14
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
580
Homo sapiens
Biosample type
542
tissue
in vitro differentiated cells
38
primary cell
1
stem cell
Organ
934
pancreas
720
liver
581
connective tissue
494
epithelium
485
adipose tissue
351
kidney
346
heart
283
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
96
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
580
AMP
1
T1D
Genome assembly (visualization)
510
hg19
506
GRCh38
Lab
580
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
RNA binding protein
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
581 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
2
1
+ See 4 more…
primary cell
osteoblast
5
2
1
1
cardiac fibroblast
4
3
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
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