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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
348
ChIP-seq
104
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
348
DNA binding
104
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
356
transcription factor
88
recombinant protein
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
236
November, 2017
83
February, 2021
36
November, 2018
25
December, 2018
21
August, 2021
20
October, 2019
14
January, 2019
11
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
518
bam
459
bigWig
364
fastq
341
bed narrowPeak
294
bigBed narrowPeak
119
tsv
55
bed broadPeak
55
bigBed broadPeak
20
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
459
Homo sapiens
Biosample type
1710
tissue
603
primary cell
459
cell line
253
in vitro differentiated cells
3
stem cell
Organ
280
liver
56
artery
56
blood vessel
56
heart
56
vasculature
55
pancreas
49
epithelium
45
blood
45
bodily fluid
12
kidney
8
embryo
Project
455
AMP
4
T1D
Genome assembly (visualization)
455
hg19
396
GRCh38
Lab
446
AMP-T2D consortium
13
Bing Ren, UCSD
Audit category:
57
inconsistent ontology term
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
20
inconsistent control read length
5
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
459 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
274
5
1
smooth muscle cell of the coronary artery
4
52
EndoC_BH1
12
33
2
GM12878
44
1
H1-hESC
8
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