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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
17
total RNA-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
17
DNA binding
17
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
RNA binding protein
1
broad histone mark
Date released
281
November, 2017
96
February, 2021
43
August, 2021
40
November, 2018
30
October, 2019
26
December, 2018
21
May, 2021
17
January, 2019
15
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
21
bigWig
17
tsv
13
bed narrowPeak
8
bam
1
bedpe bed3+
1
hic
1
vcf
Organism
43
Homo sapiens
Biosample type
229
tissue
43
cell line
42
in vitro differentiated cells
4
primary cell
Organ
30
liver
8
embryo
2
epithelium
2
kidney
2
pancreas
Project
43
AMP
Genome assembly (visualization)
22
hg19
8
GRCh38
Lab
33
Bing Ren, UCSD
10
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
17
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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