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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
ChIP-seq
136
total RNA-seq
40
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
175
DNA binding
138
Transcription
40
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
37
control
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
63
August, 2017
42
August, 2021
39
February, 2018
29
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
285
bam
253
bigWig
135
fastq
131
tsv
126
bed narrowPeak
40
tagAlign
25
bed bed3+
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
368
Homo sapiens
Biosample type
2208
tissue
979
primary cell
368
in vitro differentiated cells
303
cell line
10
stem cell
Organ
90
connective tissue
29
embryo
10
epithelium
3
pancreas
1
adipose tissue
1
heart
1
liver
Project
368
AMP
Genome assembly (visualization)
276
hg19
246
GRCh38
4
hg18
Lab
319
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
RNA binding protein
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
368 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
63
5
6
1
cardiomyocytes
3
59
embryonic stem cell
35
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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