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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
Assay category
38
DNA binding
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
RNA binding protein
3
chromatin remodeller
Date released
18
August, 2017
11
May, 2021
9
December, 2017
Available data
31
bam
31
bigWig
27
fastq
26
bed narrowPeak
6
bed bed3+
4
tagAlign
Organism
38
Homo sapiens
Biosample type
301
cell line
66
tissue
38
in vitro differentiated cells
Organ
18
connective tissue
3
embryo
1
epithelium
1
pancreas
Project
38
AMP
Genome assembly (visualization)
31
GRCh38
31
hg19
Lab
31
AMP-T2D consortium
7
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
in vitro differentiated cells
adipocyte
18
embryonic stem cell
7
cardiomyocytes
3
pancreatic endoderm
3
Posterior foregut
2
definitive endodermal cell
2
primitive gut cell
2
pancreatic PP cell
1
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