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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
357
ChIP-seq
177
DNase-seq
4
FAIRE-seq
3
ATAC-seq
Assay category
357
DNA binding
184
DNA accessibility
Target of assay
312
histone
312
histone modification
204
broad histone mark
108
narrow histone mark
65
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
89
May, 2019
61
April, 2019
57
November, 2017
47
October, 2019
34
December, 2017
34
October, 2018
22
August, 2017
17
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
Available data
1884
bam
1710
bigWig
1076
tsv
923
bed narrowPeak
541
bigBed narrowPeak
362
fastq
238
tagAlign
213
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
535
Homo sapiens
Biosample type
541
tissue
294
cell line
99
primary cell
15
in vitro differentiated cells
Organ
116
brain
87
kidney
84
limb
83
heart
59
blood vessel
59
vasculature
56
pancreas
47
liver
38
musculature of body
26
nerve
24
artery
18
ureter
13
spleen
5
adipose tissue
5
connective tissue
3
eye
Project
541
AMP
Genome assembly (visualization)
535
GRCh38
473
hg19
Lab
541
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
541 results
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ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
37
2
kidney
18
13
1
heart left ventricle
25
3
tibial nerve
24
2
body of pancreas
21
4
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