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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
ChIP-seq
103
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
3
RRBS
2
FAIRE-seq
Assay category
205
DNA binding
103
Transcription
41
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
173
August, 2017
47
October, 2018
46
December, 2017
26
November, 2018
24
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1884
bam
1710
bigWig
1076
tsv
923
bed narrowPeak
541
bigBed narrowPeak
362
fastq
238
tagAlign
213
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
355
Homo sapiens
Biosample type
404
primary cell
364
cell line
362
tissue
135
in vitro differentiated cells
4
stem cell
Organ
205
pancreas
81
liver
38
adipose tissue
38
connective tissue
24
spleen
12
brain
2
musculature of body
Project
362
AMP
Genome assembly (visualization)
279
hg19
265
GRCh38
Lab
336
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
362 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
RRBS
FAIRE-seq
tissue
islet of Langerhans
26
103
20
1
1
liver
66
2
1
1
body of pancreas
28
4
2
2
spleen
20
1
1
2
pancreas
15
2
1
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