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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
Assay category
46
DNA binding
Target of assay
31
histone
31
histone modification
20
transcription factor
16
narrow histone mark
15
broad histone mark
8
chromatin remodeller
RNA binding protein
1
recombinant protein
Date released
16
August, 2017
16
November, 2017
11
December, 2017
November, 2018
2
February, 2018
1
October, 2018
Available data
46
bam
46
bigWig
46
fastq
44
bed narrowPeak
21
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
46
Homo sapiens
Biosample type
17
in vitro differentiated cells
16
cell line
6
tissue
5
primary cell
2
stem cell
Organ
17
liver
9
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
46
AMP
Genome assembly (visualization)
46
hg19
43
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
46
inconsistent control read length
4
inconsistent assembly
3
inconsistent control run_type
target.investigated_as!
RNA binding protein
files.file_type!
hic
month_released!
November, 2018
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
cell line
HepG2
16
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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