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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
45
ATAC-seq
33
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
RRBS
Assay category
59
Transcription
49
DNA accessibility
33
DNA binding
1
DNA methylation
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
July, 2019
4
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
102
bam
85
bigWig
73
bed narrowPeak
59
tsv
24
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
142
Homo sapiens
Biosample type
73
tissue
66
cell line
3
primary cell
Organ
930
pancreas
731
liver
674
connective tissue
510
epithelium
486
adipose tissue
379
heart
350
kidney
283
brain
228
vasculature
223
blood vessel
159
bone element
140
artery
122
limb
94
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
AMP
Genome assembly (visualization)
128
GRCh38
94
hg19
Lab
142
AMP-T2D consortium
target.investigated_as!
RNA binding protein
files.file_type!
hic
BIOSAMPLE
ASSAY
142 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RRBS
tissue
coronary artery
1
36
4
2
tibial artery
1
1
23
2
pulmonary artery
2
pericardium
1
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
pericardium fibroblast
1
smooth muscle cell of the coronary artery
1
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