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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
2
DNase-seq
Assay category
292
DNA binding
2
DNA accessibility
Target of assay
328
transcription factor
81
recombinant protein
RNA binding protein
30
chromatin remodeller
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
35
November, 2018
25
December, 2018
9
January, 2019
8
October, 2019
Available data
457
bam
402
bigWig
364
fastq
321
bed narrowPeak
294
bigBed narrowPeak
80
tsv
55
bed broadPeak
55
bigBed broadPeak
20
tagAlign
3
bed bed3+
2
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
1
vcf
Organism
294
Homo sapiens
Biosample type
540
tissue
294
cell line
79
primary cell
15
in vitro differentiated cells
Organ
242
liver
44
blood
44
bodily fluid
7
pancreas
1
epithelium
1
kidney
Project
294
AMP
Genome assembly (visualization)
291
hg19
266
GRCh38
Lab
294
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
18
inconsistent control read length
5
inconsistent control run_type
target.investigated_as!
RNA binding protein
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
294 results
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ChIP-seq
DNase-seq
cell line
HepG2
242
GM12878
44
Panc1
6
1
glomerular visceral epithelial cell
1
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