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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
661
ChIP-seq
180
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
661
DNA binding
189
DNA accessibility
Target of assay
395
transcription factor
344
histone
344
histone modification
221
broad histone mark
123
narrow histone mark
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
274
November, 2017
163
June, 2019
89
May, 2019
61
April, 2019
57
October, 2019
52
November, 2018
46
December, 2017
34
October, 2018
28
December, 2018
23
August, 2017
15
January, 2019
6
October, 2017
2
July, 2019
Available data
2690
bam
2425
bigWig
1392
bed narrowPeak
1330
tsv
865
fastq
850
bigBed narrowPeak
298
tagAlign
269
bed broadPeak
234
bed bed3+
232
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
2
ibed
2
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
844
Homo sapiens
Biosample type
541
tissue
294
cell line
primary cell
15
in vitro differentiated cells
Organ
301
liver
116
brain
88
kidney
84
limb
83
heart
63
pancreas
59
blood vessel
59
vasculature
44
blood
44
bodily fluid
38
musculature of body
26
nerve
24
artery
18
ureter
13
epithelium
13
spleen
8
connective tissue
5
adipose tissue
3
eye
Project
850
AMP
Genome assembly (visualization)
814
GRCh38
779
hg19
Lab
850
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
24
inconsistent control read length
5
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
RNA binding protein
biosample_type!
primary cell
BIOSAMPLE
ASSAY
850 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
37
2
kidney
18
13
1
heart left ventricle
25
3
tibial nerve
24
2
body of pancreas
21
4
+ See 53 more…
cell line
HepG2
242
GM12878
44
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
12
adipocyte
1
2
See all biosamples
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