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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
Hi-C
Assay category
7
3D chromatin structure
Date released
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
October, 2019
Available data
1201
bam
1133
bigWig
896
fastq
699
bed narrowPeak
388
bigBed narrowPeak
377
tsv
157
tagAlign
153
zippedFastqFolder
97
bed broadPeak
97
bigBed broadPeak
63
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bed3
7
hic
6
bed bedgraph
6
bedpe bed3+
5
hdf5
3
cool
3
tar
3
txt
2
csv
1
vcf
Organism
7
Homo sapiens
Biosample type
tissue
6
primary cell
1
cell line
Organ
5
epithelium
3
pancreas
2
blood vessel
2
vasculature
2
vein
1
liver
Project
3
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
Audit category:
inconsistent ontology term
4
audit script error
target.investigated_as!
RNA binding protein
audit.ERROR.category!
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
7 results
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Clear Filters
Hi-C
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
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