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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
68
Transcription
4
DNA accessibility
Date released
57
August, 2021
7
May, 2022
5
February, 2021
3
February, 2023
1
October, 2022
Available data
3223
bam
2970
bigWig
1669
bed narrowPeak
1542
tsv
1269
fastq
949
bigBed narrowPeak
398
tagAlign
313
bed broadPeak
276
bigBed broadPeak
271
bed bed3+
153
zippedFastqFolder
73
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
72
Homo sapiens
Biosample type
69
tissue
3
in vitro differentiated cells
1
cell line
Organ
bone element
62
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
73
AMP
Genome assembly (visualization)
4
hg19
Lab
57
Katalin Susztak, Upenn
7
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
6
audit script error
1
inconsistent ontology term
target.investigated_as!
RNA binding protein
organ_slims!
bone element
BIOSAMPLE
ASSAY
73 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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