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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
32
ChIP-seq
20
ATAC-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
4
single cell RNA-seq
2
FAIRE-seq
Assay category
92
Transcription
32
DNA binding
27
DNA methylation
22
DNA accessibility
8
3D chromatin structure
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
3
control
Date released
670
February, 2021
403
August, 2017
369
November, 2017
314
October, 2019
296
May, 2020
214
June, 2019
168
July, 2018
164
May, 2021
151
August, 2021
115
May, 2019
108
July, 2019
103
February, 2023
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
49
April, 2018
39
February, 2018
33
December, 2018
25
February, 2020
24
January, 2019
22
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
157
bigWig
154
bam
91
tsv
73
fastq
53
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
16
bigBed narrowPeak
4
bed bed3+
4
hdf5
1
csv
Organism
181
Homo sapiens
Biosample type
104
primary cell
77
tissue
Organ
78
pancreas
74
epithelium
25
heart
18
brain
18
connective tissue
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
181
AMP
Genome assembly (visualization)
163
hg19
151
GRCh38
Lab
181
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
32
missing controlled_by
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
181 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 26 more…
tissue
heart left ventricle
2
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 26 more…
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