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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
477
ChIP-seq
160
total RNA-seq
6
DNase-seq
5
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
477
DNA binding
164
Transcription
9
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
104
control
100
histone modification
99
histone
82
recombinant protein
58
narrow histone mark
RNA binding protein
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
281
November, 2017
194
May, 2020
59
December, 2017
54
August, 2017
34
November, 2018
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
624
bam
533
bigWig
408
fastq
352
bed narrowPeak
303
bigBed narrowPeak
165
tsv
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
663
Homo sapiens
Biosample type
319
tissue
317
cell line
14
primary cell
13
in vitro differentiated cells
Organ
716
pancreas
669
connective tissue
663
liver
486
adipose tissue
358
epithelium
347
heart
283
brain
231
vasculature
226
blood vessel
160
kidney
158
bone element
140
artery
122
limb
96
musculature of body
60
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
663
AMP
Genome assembly (visualization)
536
hg19
480
GRCh38
Lab
663
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
21
inconsistent control read length
5
inconsistent control run_type
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
663 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
tissue
liver
144
147
2
3
1
1
1
1
1
right lobe of liver
9
3
2
1
1
2
cell line
HepG2
307
5
1
1
1
2
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
13
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