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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
Assay category
48
DNA binding
Target of assay
29
histone
29
histone modification
25
transcription factor
15
narrow histone mark
14
broad histone mark
13
chromatin remodeller
RNA binding protein
1
recombinant protein
Date released
16
August, 2017
16
November, 2017
11
December, 2017
4
November, 2018
February, 2018
1
October, 2018
Available data
48
bam
48
bigWig
48
fastq
46
bed narrowPeak
25
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
48
Homo sapiens
Biosample type
20
cell line
15
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
21
liver
9
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
48
AMP
Genome assembly (visualization)
48
hg19
45
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
48
inconsistent control read length
6
inconsistent control run_type
4
inconsistent assembly
target.investigated_as!
RNA binding protein
month_released!
February, 2018
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
cell line
HepG2
20
in vitro differentiated cells
adipocyte
6
Posterior foregut
2
definitive endodermal cell
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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