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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
32
DNase-seq
13
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
215
DNA binding
35
DNA accessibility
13
Transcription
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
RNA binding protein
3
transcription factor
Date released
88
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
227
bam
203
bigWig
199
bed narrowPeak
123
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bigBed broadPeak
32
bed bed3+
18
fastq
15
tsv
1
bed bed3
1
tagAlign bed3+
Organism
265
Homo sapiens
Biosample type
254
tissue
11
primary cell
Organ
880
pancreas
719
liver
650
connective tissue
468
adipose tissue
456
epithelium
357
heart
340
kidney
265
brain
219
vasculature
215
blood vessel
159
bone element
137
artery
117
limb
86
musculature of body
59
blood
59
bodily fluid
59
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
265
AMP
Genome assembly (visualization)
202
GRCh38
144
hg19
Lab
265
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
target.investigated_as!
RNA binding protein
month_released!
July, 2019
assay_title!
WGBS
BIOSAMPLE
ASSAY
265 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
angular gyrus
15
+ See 75 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
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