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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
389
total RNA-seq
68
ChIP-seq
6
WGBS
5
ATAC-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
389
Transcription
68
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
RNA binding protein
Date released
386
February, 2021
57
August, 2017
18
October, 2018
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
October, 2017
1
October, 2019
Available data
424
bam
407
bigWig
389
tsv
38
fastq
8
tagAlign
7
bed narrowPeak
6
bed bed3+
5
bigBed narrowPeak
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
472
Homo sapiens
Biosample type
472
tissue
1
in vitro differentiated cells
Organ
926
pancreas
723
liver
655
connective tissue
503
epithelium
473
adipose tissue
357
heart
340
kidney
249
brain
219
vasculature
215
blood vessel
159
bone element
137
artery
117
limb
86
musculature of body
59
blood
59
bodily fluid
59
eye
43
nerve
37
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
473
AMP
Genome assembly (visualization)
408
hg19
406
GRCh38
Lab
473
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
RNA binding protein
month_released!
July, 2019
October, 2017
BIOSAMPLE
ASSAY
473 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
3
10
1
1
white adipose tissue
12
omental fat pad
1
8
2
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in vitro differentiated cells
white fat cell
1
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