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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
Assay category
49
DNA binding
Target of assay
30
histone
30
histone modification
25
transcription factor
15
broad histone mark
15
narrow histone mark
13
chromatin remodeller
RNA binding protein
1
recombinant protein
Date released
16
August, 2017
16
November, 2017
11
December, 2017
4
November, 2018
2
February, 2018
October, 2018
Available data
49
bam
49
bigWig
49
fastq
47
bed narrowPeak
24
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
49
Homo sapiens
Biosample type
20
cell line
17
in vitro differentiated cells
5
primary cell
5
tissue
2
stem cell
Organ
21
liver
8
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
49
AMP
Genome assembly (visualization)
49
hg19
46
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
49
inconsistent control read length
6
inconsistent control run_type
4
inconsistent assembly
target.investigated_as!
RNA binding protein
month_released!
October, 2018
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
cell line
HepG2
20
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
tissue
pancreas
4
liver
1
stem cell
hESC
2
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