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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
52
single cell RNA-seq
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
2
FAIRE-seq
Assay category
115
DNA binding
114
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
26
control
RNA binding protein
5
transcription factor
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
246
bam
226
bigWig
114
tsv
99
bed narrowPeak
94
bigBed narrowPeak
44
fastq
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
272
Homo sapiens
Biosample type
194
tissue
78
primary cell
Organ
59
vasculature
58
blood vessel
50
epithelium
47
pancreas
46
brain
44
heart
20
connective tissue
17
musculature of body
15
kidney
12
adipose tissue
12
limb
10
liver
7
artery
2
pericardium
1
eye
Project
272
AMP
Genome assembly (visualization)
232
hg19
219
GRCh38
Lab
272
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
272 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
tissue
thoracic aorta
15
2
1
temporal lobe
15
1
1
ascending aorta
15
1
aorta
13
2
angular gyrus
13
+ See 28 more…
primary cell
pancreatic delta cell
7
kidney epithelial cell
4
1
1
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
+ See 30 more…
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