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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
39
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
39
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
12
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
RNA binding protein
Date released
713
February, 2021
392
May, 2021
372
August, 2017
369
November, 2017
341
May, 2020
313
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
115
May, 2019
104
July, 2019
76
April, 2019
75
December, 2017
73
September, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
58
November, 2018
49
April, 2018
47
September, 2023
39
February, 2018
33
December, 2018
27
June, 2019
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
123
tsv
105
bed narrowPeak
64
xls
57
txt
49
bam
46
bigWig
24
tagAlign
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
312
Homo sapiens
Biosample type
229
tissue
43
cell line
40
in vitro differentiated cells
1
primary cell
Organ
130
kidney
92
heart
31
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
Project
313
AMP
Genome assembly (visualization)
102
GRCh38
54
hg19
Lab
148
AMP-T2D consortium
128
Katalin Susztak, Upenn
35
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
RNA binding protein
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
313 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
17
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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