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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
11
ATAC-seq
6
single cell RNA-seq
1
Hi-C
1
pCHi-C
1
total RNA-seq
Assay category
32
DNA binding
11
DNA accessibility
7
Transcription
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
37
fastq
35
bam
31
bigWig
28
bed narrowPeak
28
bigBed narrowPeak
3
tsv
1
bedpe bed3+
Organism
52
Homo sapiens
Biosample type
26
cell line
22
tissue
3
primary cell
1
in vitro differentiated cells
Organ
25
blood
25
bodily fluid
14
kidney
7
spleen
3
epithelium
3
pancreas
2
adipose tissue
2
connective tissue
1
liver
Project
52
AMP
Genome assembly (visualization)
43
GRCh38
32
hg19
Lab
38
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
1
inconsistent control
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
52 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
Hi-C
pCHi-C
total RNA-seq
cell line
GM12878
25
HepG2
1
tissue
kidney
11
3
spleen
7
adipose tissue
1
primary cell
pancreatic alpha cell
2
pancreatic acinar cell
1
in vitro differentiated cells
white fat cell
1
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