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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
32
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
single cell RNA-seq
Assay category
DNA accessibility
94
Transcription
32
DNA binding
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
RNA binding protein
2
chromatin remodeller
Date released
666
February, 2021
392
August, 2017
369
November, 2017
360
May, 2021
281
October, 2019
241
May, 2020
236
August, 2021
168
July, 2018
115
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
90
December, 2017
76
April, 2019
65
October, 2018
60
March, 2020
59
September, 2018
57
November, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
34
November, 2019
33
December, 2018
27
June, 2019
25
February, 2020
24
January, 2019
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
109
fastq
32
bam
28
bed narrowPeak
28
bigBed narrowPeak
28
bigWig
4
tsv
4
txt
Organism
132
Homo sapiens
Biosample type
76
primary cell
32
cell line
21
tissue
4
in vitro differentiated cells
Organ
43
pancreas
40
epithelium
25
blood
25
bodily fluid
7
spleen
4
bone element
4
connective tissue
4
eye
4
skeleton
1
heart
1
liver
Project
76
HPAP
47
AMP
10
T1D
Genome assembly (visualization)
28
GRCh38
28
hg19
Lab
76
Klaus Kaestner, Upenn
47
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent control
target.investigated_as!
RNA binding protein
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
133 results
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Clear Filters
total RNA-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
single cell RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
cell line
GM12878
25
EndoC_BH1
3
2
1
HepG2
1
tissue
spleen
7
islet of Langerhans
5
pigmented layer of retina
2
retina
2
acetabular part of hip bone
1
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in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
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