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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
313
ChIP-seq
1
Hi-C
Assay category
313
DNA binding
1
3D chromatin structure
Target of assay
272
transcription factor
histone
88
histone modification
75
control
66
recombinant protein
50
broad histone mark
RNA binding protein
38
narrow histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
314
May, 2020
298
August, 2021
281
November, 2017
254
May, 2021
205
August, 2017
205
February, 2023
200
May, 2022
195
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
67
November, 2018
61
March, 2020
59
December, 2017
59
September, 2020
50
November, 2019
49
April, 2018
47
September, 2023
41
September, 2018
35
October, 2018
33
December, 2018
25
February, 2020
23
February, 2018
23
May, 2019
19
April, 2020
17
January, 2019
16
April, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
312
bam
302
fastq
252
bigWig
232
bed narrowPeak
232
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
11
tagAlign
2
tar
Organism
314
Homo sapiens
Biosample type
292
cell line
19
tissue
3
primary cell
Organ
267
liver
25
blood
25
bodily fluid
15
brain
7
spleen
2
epithelium
2
vasculature
1
blood vessel
Project
314
AMP
Genome assembly (visualization)
251
hg19
204
GRCh38
Lab
314
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent control run_type
target.investigated_as!
RNA binding protein
histone
BIOSAMPLE
ASSAY
314 results
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Clear Filters
ChIP-seq
Hi-C
cell line
HepG2
266
1
GM12878
25
tissue
spleen
7
layer of hippocampus
3
caudate nucleus
2
cingulate gyrus
2
middle frontal area 46
2
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primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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