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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
4
total RNA-seq
2
DNase-seq
2
Hi-C
Assay category
48
DNA binding
4
Transcription
2
3D chromatin structure
2
DNA accessibility
Target of assay
32
transcription factor
9
control
7
histone
7
histone modification
7
recombinant protein
4
broad histone mark
3
narrow histone mark
RNA binding protein
2
chromatin remodeller
Date released
281
November, 2017
96
February, 2021
43
August, 2021
40
November, 2018
30
October, 2019
26
December, 2018
21
May, 2021
17
January, 2019
15
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
54
bam
45
bigWig
40
bed narrowPeak
33
bigBed narrowPeak
26
fastq
4
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
56
Homo sapiens
Biosample type
249
tissue
56
cell line
34
primary cell
8
in vitro differentiated cells
Organ
25
blood
25
bodily fluid
15
kidney
15
pancreas
2
epithelium
1
liver
Project
56
AMP
Genome assembly (visualization)
45
GRCh38
45
hg19
Lab
56
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
cell line
GM12878
25
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
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