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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
32
ChIP-seq
16
total RNA-seq
ATAC-seq
1
Hi-C
Assay category
56
Transcription
32
DNA binding
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
RNA binding protein
2
chromatin remodeller
Date released
693
February, 2021
398
August, 2017
369
November, 2017
360
May, 2021
292
October, 2019
242
August, 2021
241
May, 2020
214
June, 2019
168
July, 2018
123
May, 2022
115
May, 2019
102
February, 2023
102
July, 2019
90
December, 2017
76
April, 2019
67
November, 2018
65
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
34
November, 2019
33
December, 2018
25
February, 2020
24
January, 2019
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
71
fastq
32
bam
28
bed narrowPeak
28
bigBed narrowPeak
28
bigWig
19
zippedFastqFolder
Organism
89
Homo sapiens
Biosample type
56
primary cell
26
cell line
7
tissue
Organ
25
blood
25
bodily fluid
16
epithelium
16
pancreas
7
spleen
1
liver
Project
56
HPAP
33
AMP
Genome assembly (visualization)
28
GRCh38
28
hg19
Lab
56
Klaus Kaestner, Upenn
33
AMP-T2D consortium
Audit category:
1
inconsistent control
target.investigated_as!
RNA binding protein
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
89 results
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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
Hi-C
primary cell
Langerhans cell
40
pancreatic alpha cell
15
pancreatic beta cell
1
cell line
GM12878
25
HepG2
1
tissue
spleen
7
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