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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
total RNA-seq
5
MeRIP-seq
3
single cell RNA-seq
2
RNA microarray
1
ATAC-seq
1
DNase-seq
Assay category
12
Transcription
2
DNA accessibility
Target of assay
5
control
nucleotide modification
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
13
tsv
11
bam
10
bigWig
2
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
21
Homo sapiens
Biosample type
11
primary cell
5
tissue
3
cell line
2
in vitro differentiated cells
Organ
9
epithelium
6
connective tissue
5
liver
5
pancreas
3
kidney
Project
21
AMP
Genome assembly (visualization)
11
GRCh38
11
hg19
Lab
16
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
5
inconsistent ontology term
4
audit script error
target.investigated_as!
RNA binding protein
nucleotide modification
BIOSAMPLE
ASSAY
21 results
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total RNA-seq
MeRIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
DNase-seq
primary cell
osteoblast
4
1
1
hepatocyte
5
tissue
islet of Langerhans
2
kidney
1
kidney interstitium
1
renal glomerulus
1
cell line
EndoC_BH1
3
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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