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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
DNase-seq
27
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
Assay category
189
DNA accessibility
27
DNA binding
4
Transcription
Target of assay
19
histone
19
histone modification
13
control
11
narrow histone mark
8
broad histone mark
5
nucleotide modification
RNA binding protein
4
transcription factor
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
220
bam
211
bigWig
208
bed narrowPeak
207
bigBed narrowPeak
188
bed bed3+
188
bed broadPeak
188
bigBed broadPeak
4
tsv
Organism
230
Homo sapiens
Biosample type
167
tissue
57
primary cell
6
cell line
Organ
80
kidney
43
musculature of body
34
heart
32
limb
30
brain
24
epithelium
23
connective tissue
18
ureter
14
pancreas
7
vasculature
6
eye
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
230
AMP
Genome assembly (visualization)
212
GRCh38
189
hg19
Lab
220
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
30
inconsistent ontology term
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
230 results
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Clear Filters
DNase-seq
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 35 more…
primary cell
skeletal muscle satellite cell
8
cardiac fibroblast
3
4
mesenchymal stem cell
7
osteoblast
1
4
1
cardiac muscle cell
1
2
+ See 18 more…
cell line
EndoC_BH1
6
See all biosamples
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