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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
369
ChIP-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
369
DNA binding
99
DNA accessibility
60
Transcription
41
DNA methylation
Target of assay
244
transcription factor
88
histone
88
histone modification
71
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
379
bam
319
bigWig
316
bed narrowPeak
311
fastq
277
bigBed narrowPeak
134
zippedFastqFolder
78
tagAlign
63
bed broadPeak
57
bigBed broadPeak
7
txt
2
tar
1
bed bed3+
Organism
569
Homo sapiens
Biosample type
281
cell line
148
tissue
140
primary cell
Organ
321
liver
104
pancreas
88
brain
84
epithelium
4
vasculature
2
blood vessel
2
musculature of body
Project
435
AMP
134
HPAP
Genome assembly (visualization)
286
hg19
249
GRCh38
Lab
371
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
8
missing controlled_by
Audit category:
16
inconsistent control read length
2
inconsistent control run_type
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
569 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
cell line
HepG2
281
tissue
liver
20
20
islet of Langerhans
18
6
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
+ See 4 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
astrocyte of the cerebellum
2
+ See 2 more…
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