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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1369
ChIP-seq
1212
total RNA-seq
284
ATAC-seq
154
DNase-seq
89
single cell RNA-seq
87
RNA microarray
37
pCHi-C
28
snATAC-seq
21
Hi-C
20
WGBS
15
small RNA-seq
10
MeRIP-seq
10
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
154
DNA accessibility
Date released
136
June, 2019
9
November, 2018
6
October, 2019
3
August, 2017
Available data
153
bam
153
bed narrowPeak
153
bigBed narrowPeak
153
bigWig
151
bed broadPeak
151
bigBed broadPeak
150
bed bed3+
11
fastq
Organism
154
Homo sapiens
Biosample type
151
tissue
primary cell
2
cell line
1
in vitro differentiated cells
Organ
69
kidney
36
limb
32
musculature of body
27
brain
heart
18
ureter
8
pancreas
5
blood vessel
5
vasculature
4
artery
4
liver
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
epithelium
1
spleen
Project
154
AMP
Genome assembly (visualization)
153
GRCh38
139
hg19
Lab
154
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
RNA binding protein
organ_slims!
heart
biosample_type!
primary cell
BIOSAMPLE
ASSAY
154 results
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DNase-seq
tissue
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
renal cortex interstitium
11
+ See 34 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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