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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
1
Hi-C
Assay category
8
DNA binding
1
3D chromatin structure
Target of assay
8
chromatin remodeller
8
transcription factor
RNA binding protein
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
3
August, 2017
3
November, 2018
2
November, 2017
1
October, 2019
Available data
9
bigWig
8
bam
8
bed narrowPeak
8
bigBed narrowPeak
8
fastq
2
bed broadPeak
2
tagAlign
1
bed bed3+
1
bigBed broadPeak
1
hdf5
Organism
8
Homo sapiens
Biosample type
6
cell line
2
primary cell
1
tissue
Organ
5
liver
2
pancreas
Project
9
AMP
Genome assembly (visualization)
9
hg19
8
GRCh38
Lab
9
AMP-T2D consortium
Audit category:
4
missing controlled_by
Audit category:
50
inconsistent control read length
6
inconsistent control run_type
4
inconsistent assembly
target.investigated_as!
RNA binding protein
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
9 results
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Clear Filters
ChIP-seq
Hi-C
cell line
HepG2
5
Panc1
1
primary cell
skeletal muscle myoblast
2
tissue
pancreas
1
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