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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
369
ChIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
369
DNA binding
4
Transcription
1
3D chromatin structure
Target of assay
244
transcription factor
88
histone
88
histone modification
71
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
63
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
355
bam
299
bigWig
287
fastq
278
bed narrowPeak
277
bigBed narrowPeak
78
tagAlign
63
bed broadPeak
57
bigBed broadPeak
2
tar
1
hic
Organism
370
Homo sapiens
Biosample type
283
cell line
82
tissue
7
primary cell
2
stem cell
Organ
281
liver
88
brain
4
epithelium
4
vasculature
2
blood vessel
Project
369
AMP
4
community
1
ITG
Genome assembly (visualization)
250
GRCh38
247
hg19
Lab
369
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
8
missing controlled_by
Audit category:
16
inconsistent control read length
2
inconsistent control run_type
target.investigated_as!
RNA binding protein
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
374 results
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ChIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
cell line
HepG2
281
EndoC-BH1
1
1
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 1 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
chondrocytes
1
stem cell
SB Ad3.1
1
1
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