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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
115
total RNA-seq
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
149
DNA binding
115
Transcription
18
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
RNA binding protein
Date released
225
May, 2021
45
May, 2020
16
January, 2021
12
February, 2023
6
May, 2022
Available data
215
bigWig
186
bam
114
bed narrowPeak
96
tsv
84
tagAlign
6
fastq
6
txt
2
bed bed3+
Organism
304
Homo sapiens
Biosample type
239
primary cell
37
in vitro differentiated cells
23
tissue
5
cell line
Organ
22
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
225
T1D
79
AMP
Genome assembly (visualization)
215
hg19
180
GRCh38
Lab
3465
AMP-T2D consortium
304
Kyle Gaulton, UCSD
275
Klaus Kaestner, Upenn
67
Katalin Susztak, Upenn
47
KPMP
36
Bing Ren, UCSD
35
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
5
inconsistent ontology term
target.investigated_as!
RNA binding protein
organ_slims!
stomach
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
304 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
32
5
tissue
islet of Langerhans
11
6
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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