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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
44
ATAC-seq
10
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
46
DNA accessibility
10
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
RNA binding protein
Date released
66
February, 2021
35
February, 2023
October, 2019
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
75
bam
63
bigWig
58
tsv
52
bed narrowPeak
6
tagAlign
4
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
114
Homo sapiens
Biosample type
66
cell line
46
tissue
2
primary cell
Organ
919
pancreas
726
liver
670
connective tissue
485
adipose tissue
481
epithelium
339
heart
321
kidney
197
brain
184
vasculature
179
blood vessel
159
bone element
114
artery
96
musculature of body
59
blood
59
bodily fluid
53
limb
39
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
114
AMP
Genome assembly (visualization)
106
GRCh38
71
hg19
Lab
114
AMP-T2D consortium
target.investigated_as!
RNA binding protein
month_released!
October, 2019
BIOSAMPLE
ASSAY
114 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
4
2
pulmonary artery
2
tibial artery
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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