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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ATAC-seq
4
ChIP-seq
4
total RNA-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
38
DNA accessibility
6
Transcription
4
DNA binding
Target of assay
2
control
2
histone
2
histone modification
2
narrow histone mark
RNA binding protein
1
transcription factor
Date released
February, 2021
35
February, 2023
October, 2019
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
40
bed narrowPeak
9
bam
7
bigWig
6
tsv
4
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
48
Homo sapiens
Biosample type
46
tissue
2
primary cell
Organ
887
pancreas
723
liver
449
epithelium
313
kidney
308
heart
215
connective tissue
197
brain
118
vasculature
113
blood vessel
99
adipose tissue
96
musculature of body
59
blood
59
bodily fluid
48
artery
47
limb
39
eye
37
embryo
25
spleen
20
lung
18
ureter
9
bone element
8
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
48
AMP
Genome assembly (visualization)
42
GRCh38
7
hg19
Lab
48
AMP-T2D consortium
target.investigated_as!
RNA binding protein
month_released!
October, 2019
February, 2021
BIOSAMPLE
ASSAY
48 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
36
4
1
2
pulmonary artery
2
tibial artery
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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