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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
25
ChIP-seq
13
ATAC-seq
8
snATAC-seq
1
pCHi-C
Assay category
62
Transcription
25
DNA binding
21
DNA accessibility
Target of assay
26
transcription factor
RNA binding protein
8
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
150
February, 2021
December, 2018
13
November, 2018
12
January, 2019
8
February, 2023
8
January, 2021
1
January, 2018
1
May, 2021
Available data
91
bam
88
txt
78
bigWig
58
tsv
27
bed narrowPeak
25
fastq
19
bigBed narrowPeak
4
bed bed3
Organism
193
Homo sapiens
Biosample type
158
tissue
26
cell line
9
primary cell
Organ
937
pancreas
732
liver
674
connective tissue
516
epithelium
486
adipose tissue
382
heart
351
kidney
283
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
96
musculature of body
60
eye
43
nerve
37
embryo
34
blood
34
bodily fluid
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
184
AMP
9
T1D
Genome assembly (visualization)
90
hg19
85
GRCh38
Lab
184
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
target.investigated_as!
RNA binding protein
month_released!
December, 2018
BIOSAMPLE
ASSAY
193 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
cell line
GM12878
25
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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