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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
36
DNase-seq
9
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
116
DNA binding
53
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
50
histone
50
histone modification
34
broad histone mark
23
control
16
narrow histone mark
RNA binding protein
10
chromatin remodeller
Date released
69
October, 2019
32
June, 2019
25
December, 2018
13
November, 2018
12
January, 2019
8
January, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
Available data
164
bam
136
bed narrowPeak
136
bigWig
128
bigBed narrowPeak
50
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
181
Homo sapiens
Biosample type
122
tissue
51
cell line
8
primary cell
Organ
937
pancreas
733
liver
674
connective tissue
516
epithelium
486
adipose tissue
382
heart
351
kidney
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
96
musculature of body
60
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
173
AMP
8
T1D
Genome assembly (visualization)
141
hg19
140
GRCh38
Lab
173
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
target.investigated_as!
RNA binding protein
organ_slims!
brain
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
+ See 9 more…
cell line
GM12878
50
1
primary cell
peripheral blood mononuclear cell
8
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