Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
56
total RNA-seq
46
ATAC-seq
8
snATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
68
DNA binding
58
DNA accessibility
58
Transcription
Target of assay
56
transcription factor
21
histone
21
histone modification
control
14
broad histone mark
RNA binding protein
10
chromatin remodeller
7
narrow histone mark
Date released
64
February, 2021
35
February, 2023
25
December, 2018
21
October, 2019
10
November, 2018
9
January, 2019
8
January, 2021
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
2
May, 2019
1
January, 2018
Available data
136
bam
129
bigWig
117
bed narrowPeak
68
bigBed narrowPeak
58
tsv
44
fastq
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
Organism
184
Homo sapiens
Biosample type
109
cell line
65
tissue
10
primary cell
Organ
884
pancreas
639
connective tissue
625
liver
486
epithelium
462
adipose tissue
362
heart
339
kidney
252
brain
209
vasculature
205
blood vessel
159
bone element
131
artery
105
limb
90
musculature of body
59
eye
53
blood
53
bodily fluid
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
176
AMP
8
T1D
Genome assembly (visualization)
171
GRCh38
137
hg19
Lab
176
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
target.investigated_as!
RNA binding protein
control
BIOSAMPLE
ASSAY
184 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
4
52
8
GM12878
44
1
tissue
coronary artery
2
1
36
2
tibial artery
18
1
1
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
Download