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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
215
DNA binding
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
RNA binding protein
3
transcription factor
Date released
88
November, 2017
84
October, 2019
28
May, 2019
15
October, 2017
Available data
193
bam
169
bigWig
167
bed narrowPeak
118
tagAlign
91
bigBed narrowPeak
15
fastq
12
bed broadPeak
3
bigBed broadPeak
1
tagAlign bed3+
Organism
215
Homo sapiens
Biosample type
209
tissue
6
primary cell
Organ
494
liver
215
brain
209
pancreas
143
connective tissue
121
epithelium
97
vasculature
95
blood vessel
88
heart
68
adipose tissue
66
limb
50
blood
50
bodily fluid
49
kidney
39
musculature of body
35
nerve
33
artery
22
embryo
20
spleen
17
vein
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
215
AMP
Genome assembly (visualization)
168
GRCh38
120
hg19
Lab
215
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
215 results
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Clear Filters
ChIP-seq
tissue
layer of hippocampus
23
brain
20
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 63 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
See all biosamples
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