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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
187
DNA binding
37
DNA accessibility
21
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
control
RNA binding protein
3
transcription factor
Date released
79
October, 2019
73
November, 2017
30
June, 2019
25
May, 2019
15
July, 2019
13
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
213
bigWig
210
bam
200
bed narrowPeak
124
bigBed narrowPeak
99
tagAlign
44
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
23
tsv
13
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
252
Homo sapiens
Biosample type
240
tissue
12
primary cell
Organ
884
pancreas
639
connective tissue
625
liver
486
epithelium
462
adipose tissue
339
kidney
327
heart
252
brain
209
vasculature
205
blood vessel
159
bone element
131
artery
105
limb
90
musculature of body
59
eye
53
blood
53
bodily fluid
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
252
AMP
Genome assembly (visualization)
211
GRCh38
155
hg19
Lab
252
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
target.investigated_as!
RNA binding protein
control
BIOSAMPLE
ASSAY
252 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
17
14
1
1
1
layer of hippocampus
20
caudate nucleus
13
1
1
substantia nigra
14
1
temporal lobe
13
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
1
1
1
brain microvascular endothelial cell
1
1
1
choroid plexus epithelial cell
1
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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