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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
3
WGBS
3
single cell RNA-seq
2
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
81
DNA binding
4
DNA accessibility
3
DNA methylation
3
Transcription
Target of assay
39
transcription factor
26
histone
26
histone modification
25
control
13
narrow histone mark
12
broad histone mark
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
18
October, 2018
2
July, 2018
1
April, 2018
1
August, 2018
1
November, 2018
1
October, 2017
Available data
583
bam
560
bigWig
478
tsv
92
fastq
65
bed narrowPeak
27
bed bed3+
22
bigBed narrowPeak
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
92
Homo sapiens
Biosample type
51
in vitro differentiated cells
38
tissue
3
primary cell
Organ
463
pancreas
408
liver
253
epithelium
92
connective tissue
50
blood
50
bodily fluid
39
adipose tissue
27
embryo
24
spleen
18
brain
4
vasculature
2
blood vessel
2
musculature of body
Project
92
AMP
Genome assembly (visualization)
66
GRCh38
64
hg19
Lab
92
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
92 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
ATAC-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
49
1
white fat cell
1
tissue
white adipose tissue
12
subcutaneous adipose tissue
10
1
omental fat pad
8
1
1
adipose tissue
2
3
primary cell
pancreatic stellate cell
3
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